3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures
نویسندگان
چکیده
Motivation Complementing structural information with biochemical and biomedical annotations is a powerful approach to explore the biological function of macromolecular complexes. However, currently the compilation of annotations and structural data is a feature only available for those structures that have been released as entries to the Protein Data Bank. Results To help researchers in assessing the consistency between structures and biological annotations for structural models not deposited in databases, we present 3DBIONOTES v2.0, a web application designed for the automatic annotation of biochemical and biomedical information onto macromolecular structural models determined by any experimental or computational technique. Availability and implementation The web server is available at http://3dbionotes-ws.cnb.csic.es. Contact [email protected]. Supplementary information Supplementary data are available at Bioinformatics online.
منابع مشابه
Fuzzy Neighbor Voting for Automatic Image Annotation
With quick development of digital images and the availability of imaging tools, massive amounts of images are created. Therefore, efficient management and suitable retrieval, especially by computers, is one of themost challenging fields in image processing. Automatic image annotation (AIA) or refers to attaching words, keywords or comments to an image or to a selected part of it. In this paper,...
متن کاملDIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data
Differential expression analysis (DEA) is one of the main instruments utilized for revealing molecular mechanisms in pathological and physiological conditions. DIANA-mirExTra v2.0 (http://www.microrna.gr/mirextrav2) performs a combined DEA of mRNAs and microRNAs (miRNAs) to uncover miRNAs and transcription factors (TFs) playing important regulatory roles between two investigated states. The web...
متن کاملTags Re-ranking Using Multi-level Features in Automatic Image Annotation
Automatic image annotation is a process in which computer systems automatically assign the textual tags related with visual content to a query image. In most cases, inappropriate tags generated by the users as well as the images without any tags among the challenges available in this field have a negative effect on the query's result. In this paper, a new method is presented for automatic image...
متن کاملCollaborative Annotation of 3D Crystallographic Models
This paper describes the AnnoCryst system-a tool that was designed to enable authenticated collaborators to share online discussions about 3D crystallographic structures through the asynchronous attachment, storage, and retrieval of annotations. Annotations are personal comments, interpretations, questions, assessments, or references that can be attached to files, data, digital objects, or Web ...
متن کاملA CAD System Framework for the Automatic Diagnosis and Annotation of Histological and Bone Marrow Images
Due to ever increasing of medical images data in the world’s medical centers and recent developments in hardware and technology of medical imaging, necessity of medical data software analysis is needed. Equipping medical science with intelligent tools in diagnosis and treatment of illnesses has resulted in reduction of physicians’ errors and physical and financial damages. In this article we pr...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره 33 شماره
صفحات -
تاریخ انتشار 2017